Cheap Apartments For Rent In San Juan Capistrano . 5 rows san juan capistrano rental pricing. San juan capistrano 1 bedroom apartments : 41 Houses for Rent in Mission Viejo, CA Westside Rentals from www.westsiderentals.com San juan capistrano, ca cheap houses for rent. With great rent specials, price drops, and the best values in san juan capistrano, one of these 98 rentals will be your next home. As of august 2021, the average apartment rent in san juan capistrano, ca is $2,075 for one bedroom, and $2,633 for two bedrooms.